Scaffold Ga0211699_10017297

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211699_10017297

Scaffold Ga0211699_10017297

Overview

Basic Information
Taxon OID	3300020410 Open in IMG/M
Scaffold ID	Ga0211699_10017297 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2831
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_076
Coordinates	Lat. (^o)	-21.0675	Long. (^o)	-35.3923	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019151	Metagenome	231	Y
F054095	Metagenome	140	N
F095345	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211699_1001729710	F019151	AGGA	MITADERAQDGLDLFEINGSQSFEMENETLKICAAEDGTIYRSVRGLDVRDADGNCVFSLSWSETGVCGTLYNEDFKVEITEEF
Ga0211699_100172976	F095345	AGGA	MSELRIIKERRFYDQYGNKKFAMLEEGQTVKIERWLNAGRGPLLCSVVDPSEVSKDFGVRDGMLVEVDWEDLGFE
Ga0211699_100172979	F054095	GGA	MIPQWKMNGKDMRFDGSIEIGVVEVRDLFNDLVVTLWVDQEESGSIAVKTLGGIGNGRYDVQILSREKPVEQGEEWKEL

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