NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211699_10023789

Scaffold Ga0211699_10023789


Overview

Basic Information
Taxon OID3300020410 Open in IMG/M
Scaffold IDGa0211699_10023789 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2361
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_076
CoordinatesLat. (o)-21.0675Long. (o)-35.3923Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000681Metagenome / Metatranscriptome939Y
F000724Metagenome / Metatranscriptome919Y
F004819Metagenome / Metatranscriptome422Y

Sequences

Protein IDFamilyRBSSequence
Ga0211699_100237891F000724AGGAGMPKKEKVWTMGSNGPIGPWVWHVWVKGKKKAIRIVAFDKNHIQDQLEGESIQKIEKLPEPKEKIKRSMPLGPKGAKISRPADYDNGFKVLRAWVDEHGGPPEEIRKKLRELYIDYDKAPQKTTTYSARKKTRHKI
Ga0211699_100237893F004819AGGTGGMQFWPKDENPMLDERSARFHARVMKKDLATLDYVFDQGNRDINVARATNHVNWDYGKDKWCEVDHLMLTFYIKARTTDTREYLEDMINRDVVKLIKGPRYYDSAKVYCMIDMDHPEDESIYDIIKVPKAKRPAPYNVEGNEGDITYHVTLHVQECNNSDLAIYEDLTGGGNYFDLSGKNLEIKEKEMA
Ga0211699_100237895F000681N/AMYKRDEHYYSVISTEDLYKELNTNYTGETDLVQSLMSRAISNGWVQTRHELGVANEELWSLSDWPEGEGFGSSDHYEYDRRIKESIANERKFIQAETELVTINRLTECPKNDTVRQYMKINEKLKEGMVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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