NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211699_10055565

Scaffold Ga0211699_10055565


Overview

Basic Information
Taxon OID3300020410 Open in IMG/M
Scaffold IDGa0211699_10055565 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1467
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_076
CoordinatesLat. (o)-21.0675Long. (o)-35.3923Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003679Metagenome / Metatranscriptome474Y
F038858Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0211699_100555652F038858AGGAMKRIEKIGDGMIRAFTLPIRVCIGLYKCVEKNTPERLEMPFEIKRKEDTDGRNKETTSC
Ga0211699_100555655F003679AGGAGGVYRVILKGKFKERPINLARAVKLIYRQDFSGSLRKENISWWKQYWIKPVYLQIIYPKKGWITLVKVYREGRPSIRVITKPTSSSKRELLVYDKLYGKEE

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