Basic Information | |
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Taxon OID | 3300020410 Open in IMG/M |
Scaffold ID | Ga0211699_10073062 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1268 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_076 | |||||||
Coordinates | Lat. (o) | -21.0675 | Long. (o) | -35.3923 | Alt. (m) | Depth (m) | 150 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001026 | Metagenome / Metatranscriptome | 802 | Y |
F001479 | Metagenome / Metatranscriptome | 687 | Y |
F014025 | Metagenome / Metatranscriptome | 266 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211699_100730623 | F001479 | AGGAG | MSKEMLFLCDVYDKWLDENDLPHRSACDILYGANAMKLTGNQTYWLESFIATWDVIAEHC |
Ga0211699_100730624 | F014025 | AGGA | MNQLDNYELSTLHYTLCYYIGSEKTRLDEDEIEWLHLLRDKVDCIMQSQAKYDMETV |
Ga0211699_100730625 | F001026 | GGA | MMHTLKLDDMELTALITHLEGQSEMMVESRLNCSNPSELPDREEVLLNLVYAKAFTIGWEADKNPKVDFNIIENQDRIYKYK |
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