NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211516_10055142

Scaffold Ga0211516_10055142


Overview

Basic Information
Taxon OID3300020413 Open in IMG/M
Scaffold IDGa0211516_10055142 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1990
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_018
CoordinatesLat. (o)35.7593Long. (o)14.3453Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0211516_100551423F005813GGAGGMKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPTHEAMSWFRWAHDCMLRGQYKDAEAMLYKGLKDDRTTTSDG
Ga0211516_100551424F006217GGAMIELLLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVETLRQFLKDNPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGSDKVKRSKC
Ga0211516_100551425F029123AGGAGMSYEVWFGKNGKWFGYHSFKYRMEAVDCELKYLNIFKDLTVEIRSRAHDH
Ga0211516_100551426F027536AGGAGMIIKDNRRYNGGHWLYKVTPIDRVIHDSKRRADDYWWEGDDDEARLEEAYIKLYEQDREEGIEWVPNF
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