NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211516_10133707

Scaffold Ga0211516_10133707


Overview

Basic Information
Taxon OID3300020413 Open in IMG/M
Scaffold IDGa0211516_10133707 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1166
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_018
CoordinatesLat. (o)35.7593Long. (o)14.3453Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030251Metagenome186N
F046022Metagenome152N
F105929Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0211516_101337071F030251GGGGGMLVSDSFPPVKEVTFPAQQREFTLVKRTPFIGTPLWIVFERTYFGDPQQVARFTDFDLALECFDSLVEDAKNEDQ
Ga0211516_101337072F046022GAGGMKINRQILTARALQNIQTKTAPQRAVDPVEKSAKIRSWKEIFDAQLKGESDA
Ga0211516_101337073F105929AGGAMTTFTGYIARETEKAYGVLVNLTDSKMAWIPKSKVEKKTCSDLAAVVIIGWPLQRKVWLTDFEIDTEWFNKVLA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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