NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211644_10156306

Scaffold Ga0211644_10156306


Overview

Basic Information
Taxon OID3300020416 Open in IMG/M
Scaffold IDGa0211644_10156306 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)932
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.972Long. (o)-84.601Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0211644_101563062F029123AGGAGMSYEVWFGENGKWFGYHSFKYKIDAKRYKERYQKMFKSLTVEIRRRVHAS
Ga0211644_101563063F027536AGGAGGMRVSPDGWRYKVTPIDRVINDCRRRADDAWWDGNDDEARLHEQEQKLYEKDKEEGVLWVPNF
Ga0211644_101563064F015102GGAMESDDDAEDKNAPFDDVTHWVGNLPRKDTDRPKCVTKRSTWRKIKSNFFSQELGVEKKRE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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