NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211528_10005446

Scaffold Ga0211528_10005446


Overview

Basic Information
Taxon OID3300020417 Open in IMG/M
Scaffold IDGa0211528_10005446 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8076
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0108Long. (o)64.532Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004772Metagenome / Metatranscriptome424N
F012816Metagenome / Metatranscriptome277Y
F057692Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0211528_1000544610F004772AGGAGMASNIKVAHNVSSDGAIITGFRYVDAPTVTLGSEGGSDNPTPTTTRIIAVHAYSTIVGDIAISGSKQITNKTAKGNALRYRVGATDSNDAYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG
Ga0211528_100054463F012816AGGAGMMQKGKGYPSHVKDTDKSFGDPYAQDITGGRNIRSALNKWDESSWKISDSKKSK
Ga0211528_100054464F057692N/AMEIWDEIGAEFNQEIERLRATLGAGIAEDFCHYRQIVGSIHGIEWARDNLRDIVKKRLHMEDD
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Institute for Fundamental Biomedical Research
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