NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211528_10011408

Scaffold Ga0211528_10011408


Overview

Basic Information
Taxon OID3300020417 Open in IMG/M
Scaffold IDGa0211528_10011408 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4924
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0108Long. (o)64.532Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075433Metagenome / Metatranscriptome119N
F086698Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0211528_100114083F086698GGAVYVAKYVAGNNDTDKVQIHGTTGSGNVRAISALTQENNTSLLFTRQGREDFASATHPRMQVPSHTIAKQLPLLCGLQDVVAQTGFLITADSSNTVTVMIGGNSVSSTDGIPLVAGQSIFIDIVRLSKIYAIAATDPTSETCNLFWLDM
Ga0211528_100114085F075433AGGAGMSDETVMAKVNAFAQELKEMGVEDFIFAAGSSSGLLAIQYDGDPRGVCFLAMSALMNAMFDSIDNETGEVSHGGREDYGE
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