NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211528_10042948

Scaffold Ga0211528_10042948


Overview

Basic Information
Taxon OID3300020417 Open in IMG/M
Scaffold IDGa0211528_10042948 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2020
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → unclassified Phycisphaeraceae → Phycisphaeraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0108Long. (o)64.532Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037423Metagenome / Metatranscriptome168Y
F058921Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211528_100429481F058921N/ALENIDVIIDDRRDQFEAVLTDYFKREGQMEGGEFMNLAVAIEDGVLTSYEWDLETDGQYSESYECTARYTHYYDPEDLGLGIEVLKQIVDSRDFRIELRKQLLEAPREEQNTQYYLNMDAQTLEQGVPGAREINMTVEFSVNADAPDIMTALFVELVEGEMDDEDNLKVVFNRVLAQFVNSRKPAFMQTNENLVKTWKGFLYD
Ga0211528_100429484F037423AGGMSKFLQDPDYLFSILTIIVKKSGGKITLTEEEMKSVSKGDLIGMYYEPKTGSLILKEVEPEDMLQATSIVREGNTTDKVYDN
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