NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211528_10056628

Scaffold Ga0211528_10056628


Overview

Basic Information
Taxon OID3300020417 Open in IMG/M
Scaffold IDGa0211528_10056628 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1686
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0108Long. (o)64.532Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093964Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211528_100566281F093964N/AMKAEILAENIVKGSGSHGLKKEQLTKIFSAIDNLEDFAYTLKKVFEHGGKDYLTTQIFSHAVPSFDSFTQWYHIDDKFDASWGFDKKDAGCYLYGLFKEQPPKQVDILDDAVIYIGESRATTRNCMLGRRTDFKGTVRNDRLSPYGCGTAFKDQFGKDNIDFVYQAYLPMHNSLVKEAEMEMLCMYYKKYNKIPACNPNNDLRRVKLRMGI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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