Scaffold Ga0211528_10102949

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211528_10102949

Scaffold Ga0211528_10102949

Overview

Basic Information
Taxon OID	3300020417 Open in IMG/M
Scaffold ID	Ga0211528_10102949 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1158
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_038
Coordinates	Lat. (^o)	19.0108	Long. (^o)	64.532	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030729	Metagenome	184	Y
F032243	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211528_101029493	F032243	GGAGG	MSSNYEMYGAEEGWEYPQVGDLVEIASKSSLKTEVGVVVEPNEYIKNDHLWAQVLLNNGKMKVLPKRELKVIQRGESNDEG
Ga0211528_101029494	F030729	AGG	MHKMLALLVRLVYNMCVSKKETKEYPMKVTKKKIEAILQKDERMKWVTLWYDRSAKQWIFTGGDSVMWESSGTGIFRLDMLSVEEWVDYAYQLAGRKRYV

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