NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211557_10212009

Scaffold Ga0211557_10212009


Overview

Basic Information
Taxon OID3300020418 Open in IMG/M
Scaffold IDGa0211557_10212009 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)902
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_142
CoordinatesLat. (o)25.5416Long. (o)-88.4044Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014155Metagenome / Metatranscriptome265Y
F020709Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0211557_102120091F014155AGGAGMNHQRFKFYKHSTSYYKSLYNTITEIEDKGLEPCITQYPSTINYNRKSKFIKSNSNTNKLHKKV
Ga0211557_102120092F020709AGGAGMTNIKTTTKTAFGQVRHYVTDPVQADALKTLTGKITVSDSDLVALQILGLQVNGVNYVNQLALAV

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