NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211512_10001771

Scaffold Ga0211512_10001771


Overview

Basic Information
Taxon OID3300020419 Open in IMG/M
Scaffold IDGa0211512_10001771 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12963
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_004
CoordinatesLat. (o)35.5571Long. (o)-6.5586Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025308Metagenome202N

Sequences

Protein IDFamilyRBSSequence
Ga0211512_100017717F025308GGAMISDEDFKFLLQESNGCKKALEIGTGTGKSSAALKLNCEVYSIDRNDIFEYNIDINRFICESKDYWNDYLHYDFDFVFIDGSIGTGDCEEILKRTKDSFKIVFHDYIPGEKDKNTNKGYYNMKAFKECAIEQYDIIEKLGGSHCAILTLKKDK

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