NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211512_10015232

Scaffold Ga0211512_10015232


Overview

Basic Information
Taxon OID3300020419 Open in IMG/M
Scaffold IDGa0211512_10015232 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3970
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_004
CoordinatesLat. (o)35.5571Long. (o)-6.5586Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023122Metagenome211N
F033459Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0211512_100152324F023122N/AMSKAPNDKKNLERDVRLRYSVQSGQDTIHGDTNYQVITQEAQSFGFYQSTGQGASEGGGPGTGKHVLSTPGMSMEVLGSGLKVRDAGDISQLPAKIIKAKKGDMIFECENGNILLRAKNVFIDADGGGQDGQFTVKAERMVDIGAPDIRVQGEKVTVKASKDMTVIAKGQFELRYGFMVAASFADKSFGALTANLKKTQLSTMRTL
Ga0211512_100152325F033459GAGGMNISRLQSDKLIVGTNDVSYIAPDKAPTGTAVLNGPVYIGKTGASPGY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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