NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211512_10016380

Scaffold Ga0211512_10016380


Overview

Basic Information
Taxon OID3300020419 Open in IMG/M
Scaffold IDGa0211512_10016380 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3804
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_004
CoordinatesLat. (o)35.5571Long. (o)-6.5586Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006662Metagenome / Metatranscriptome367Y
F036739Metagenome169Y
F072437Metagenome121N
F097516Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0211512_1001638010F006662GAGGVRTLTSKEYELMSKIYNSTDENEANLSFEFGLMNDTYYQLFHSYTETKKEVN
Ga0211512_100163805F072437N/AMAIDTFTLQFNEYELETIAAALADYRDYADESTDPEDLIGRTPVLARCNAIEDKIDEAFANQ
Ga0211512_100163806F097516N/AMVINSQLAPCQQSYRITLDLTVDDDFNPRQIDFRRVFDLSDYESINTHIEEL
Ga0211512_100163807F036739AGGAGGMITPISPLVVNKYRKASFPQKVTQIGVNLWKKYIKRFINVILNILKRFISSVKSVINRMFWWF
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