NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211512_10042053

Scaffold Ga0211512_10042053


Overview

Basic Information
Taxon OID3300020419 Open in IMG/M
Scaffold IDGa0211512_10042053 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2225
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_004
CoordinatesLat. (o)35.5571Long. (o)-6.5586Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004327Metagenome / Metatranscriptome443Y
F095622Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0211512_100420533F095622GAGGMQYNETLVKLAKTFLANENVEVYFDEARTEFSICVDVHNNRIWTDGNRGLWSTVAKGVKVRHANFLVTYDEEDDYWSGGLAGTVHYDGSGEDGTWYDGSDVEQNVLINKVKDMRESDGMIYTDTAFLDNLKKYMVESCDYDMRLEEYLDFDYSEQGMQDDEYVNLDVELDGTFWLYVIDEMQKEGIAHRRIGEEDIVTEAVA
Ga0211512_100420535F004327GAGGMRKFIKIGTKVVTRHGEAKVTGIELCESHSEKYGIDMDKVFIEDKDRCVFDMDNGHWSYGYQVTVCQ
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