NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10000052

Scaffold Ga0211580_10000052


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10000052 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81635
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)94 (83.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016674Metagenome245Y
F070219Metagenome123N
F072440Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0211580_1000005235F072440GGAGMSKYFTVVTASDKSLDGKSFYSGQAKTEKKSIDIAIQNYTIGKMDNDDQIFTIRTYDDISNVSLKAIRT
Ga0211580_1000005239F016674AGGAGMSRKKSNIIDFKKATAKKFNDENEIIFTVEGDDYQLGEMVHQAHNDNGMEFIFKLEEFDDDEPDGTIH
Ga0211580_1000005297F070219GGAGMAKVKSLMMDLQEEFYDKALILIKDSDSAWEAQQKVEKLRKVEYNWLDQFAIAEETENAWYVS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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