NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10000184

Scaffold Ga0211580_10000184


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10000184 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42776
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (69.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074010Metagenome120N
F105369Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211580_1000018434F105369AGGAGMFSFIKNLFVPKPKPIKKTSLMILTKKELENLGRKHGIELDRRFTKSDLVEELYEYLQKG
Ga0211580_1000018438F074010AGGAMIKFSEIKDVHPKGSIWIGENRNMNDKTLLHSQALSFHENFLDVANDVFTTDKRFADVTEHKWMQPLFDKLMKLLEDVGFGKYYVVQADFNKATDVPSHHRMLYVPCCTPDCIDLDIQTGEKGIFKLPLKEGSFIIMPENSGIRIIAPPGKMFLGLIMGICKED
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