NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10001430

Scaffold Ga0211580_10001430


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10001430 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12863
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (84.62%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F000896Metagenome / Metatranscriptome845Y
F004819Metagenome / Metatranscriptome422Y
F005266Metagenome / Metatranscriptome406Y
F047915Metagenome / Metatranscriptome149Y
F092921Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211580_1000143012F000379AGGAGMQKIDYTNKHGIMVGYIDRSDNVVAVETGWNIKPEDMAKILLEKYPTKEDAIKAVDSPALVPSFRKDDYWYVDGFGDVIESNLSWNKDEMRKNVGHLFLFMKGTWQYSDNGIDWEPADLEFSIKEVA
Ga0211580_1000143016F005266AGGGGGMSVHIRYRFLKEKGDYLRDPEMTRGYTLCEGSIQQPFHKVLREFYKDFKGRGVQIFNIWRSAPGEANYRMEEEERRMWI
Ga0211580_1000143018F047915AGGAGMAKVKAIGIWFLDGMWFASYTVGSVMFFLWAIGFIQINL
Ga0211580_1000143025F000896GGAGMTNKINMVINLSILALLIYLSVTVKQLQDKVFPDPNFMIPLQGQTMDRNELEYNIHTLLNNALKMAIQEQENQ
Ga0211580_1000143028F092921AGGAGMYKRDEHYNSKISKADLEKELSTHYRGEDDLVLSLMSQKIQDGTIQTRHELGIANEELWSLNDWPEGEGFGSSDHFEYFRRIDETVAHSRAFIQAEEELATINRLTDAPKYEAVREYMNINQKIKEGMVDYV
Ga0211580_100014309F004819GGAGGMQFWPKDEDPRLDERSARFHARVMKGDLATLDYVFDQGNRDINVARATNYVTWDYDKDMWCEVDHLMLNFYIKARTTDTREYLEDKINRDVVKLIKGPCYYKSAKVYCMIDMDHPEDESIYDIIKVPKAKRPAPYCVEGAEGEITYHVTLHIQECNPMDLIVYDEADRGDYFDLHGNNLEKKVKEPA
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