NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10007001

Scaffold Ga0211580_10007001


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10007001 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5200
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F009812Metagenome312Y
F011410Metagenome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0211580_1000700110F011410AGGMKDLKIKVEWSTSDLLVWVILAVGVALMIASIVTMYNMYTVIETMWLEIQQVKETNISLYQFIEAHKNEFN
Ga0211580_100070016F009812AGGAMDDEFEFEIDWIPEDTGPPYEVDMTKPVLNDLPAHSIDKLCKKKYGHTNWARMGQMTPEELLGNPHEFDYENGIIYFKNKYTV
Ga0211580_100070019F000720GAGGMSLIKDNKGVRKEIPNRMMSATFALPIDGRRVVGILDYTANDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEDIIMGKQPDKKQRELSTDPYAMKE
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