NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10025196

Scaffold Ga0211580_10025196


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10025196 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2596
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001504Metagenome / Metatranscriptome681Y
F007173Metagenome / Metatranscriptome356Y
F028529Metagenome / Metatranscriptome191N
F049702Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0211580_100251964F049702N/AMTLIDFNKKELHDIYSSLQYTRLEIGFESKSEEELYDRLTKLMDKVAKLRQVCDCKENVS
Ga0211580_100251966F001504GGAMTCNTEHFYAVQSFLEDDELHKIWNIIEIAMEREGYDVQNAELSMKLFDPELTETIGFYN
Ga0211580_100251967F007173GAGGMQTTTTKAKISRDNLMQYIHEDRDLLMGLQDDLSDMLSATGQFSITLDEVVQNHMPFIPLYLIENEDEIKQAFPDRVTDNEYIFIYDRGLTPNEITLNVEWID
Ga0211580_100251969F028529GGGGGMKLSKYLTENLETKTVNLTLTFDERSELLRHLEMFDENIDQLHPLVESVQDKLLGID
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