Scaffold Ga0211580_10026134

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211580_10026134

Scaffold Ga0211580_10026134

Overview

Basic Information
Taxon OID	3300020420 Open in IMG/M
Scaffold ID	Ga0211580_10026134 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2540
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_132
Coordinates	Lat. (^o)	31.493	Long. (^o)	-159.0606	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054943	Metagenome / Metatranscriptome	139	Y
F059069	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211580_100261346	F054943	GAGG	MRHLIPLTKDQLQIVQASLQLSLKYADSQYIDNVNEIMKEIEDNTRFGH
Ga0211580_100261348	F059069	N/A	MRINQYVVYTSPVKIVNDFAEACKIADDYFNDTGYIVAVEETNPVVYPEYEVA

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