NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10115783

Scaffold Ga0211580_10115783


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10115783 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1121
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F003869Metagenome / Metatranscriptome464Y
F007173Metagenome / Metatranscriptome356Y

Sequences

Protein IDFamilyRBSSequence
Ga0211580_101157832F003869AGGAMAKRQYKRSHFYSIGSMMTDEEVHKVWEIVGNALDRNGFKDADGELSIRVYDETLKKNVINVIDKSLEVN
Ga0211580_101157834F007173AGGAGMQTITKAKISREKLMEYIHEDRDLLMGIQDDLSDMLYATGKFSIDLNEIVNEYMPYIPLYLIENEDEIKETYSDRIDEDDNLFIFDRDKTPTSINLYVEWLD
Ga0211580_101157835F001479AGGAGMSKEMLFLCDVYDAWLIKNKLPHRCASELLYGADTMDKLTVRQSYWLEDFISTWDVISQN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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