NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211653_10077136

Scaffold Ga0211653_10077136


Overview

Basic Information
Taxon OID3300020421 Open in IMG/M
Scaffold IDGa0211653_10077136 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1491
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025395Metagenome / Metatranscriptome202Y
F057434Metagenome136N
F061908Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0211653_100771361F057434N/AMLHLIYTRNNYDMDSVGGHFESHITLIRNVPYSHLSRLLVNKNDPELLKECDTKYFEYQESKGITDTCFHSEISIVDDEQYFKTYKDMYPDSYTGSSGLIPAEEDYFYDYGQKTNFMLIHDYDPNYTWFGKDWTQEMINAEYEKRALDNSARV
Ga0211653_100771362F061908GGAGMNNRQIRLYNSMTKNEQKMFDHLVIVKNRKPDDVFFFLHSTFNPSRDDFKKPSFANLSTEQVTRTCQQLQLKDAA
Ga0211653_100771364F025395N/AMTIQEIYEKFATLKTSSDKLFFIDELRFLTNNKVIKFDLNFDSIEESIMNER
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