NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211525_10046973

Scaffold Ga0211525_10046973


Overview

Basic Information
Taxon OID3300020423 Open in IMG/M
Scaffold IDGa0211525_10046973 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2068
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_037
CoordinatesLat. (o)20.8188Long. (o)63.6158Alt. (m)Depth (m)600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048573Metagenome148Y
F071659Metagenome122Y
F090889Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0211525_100469731F090889N/ASNLKFKELEEYEPLLKRVRIEKSENMTEKDVEDFCDWVCAKAIRLGFDVREISEDKRVD
Ga0211525_100469732F071659GGAVKIKEWIKIEDSMTELMGWNAGIDAMCEAHREVAPKKPIYELSEREDKKLIFRLRKRYSKYKEDSN
Ga0211525_100469737F048573GGAGMPRMRQCPTCGSKLKKENYQKRIQKRRLSRDKITLSLIDDVLESISKYFPIDDLDKFSFLKNVEEITDIVIRKMIRQYLQEKFYKRGCGLKYLIGMIKNENSAYGLKKEYERKSLDRIPPKID
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Institute for Fundamental Biomedical Research
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