NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211603_10003991

Scaffold Ga0211603_10003991


Overview

Basic Information
Taxon OID3300020427 Open in IMG/M
Scaffold IDGa0211603_10003991 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6468
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2792Long. (o)26.382Alt. (m)Depth (m)850
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024572Metagenome205Y
F054926Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0211603_100039914F024572N/AMAAPTAPPALRDDLITAFRHFLCEKIGFIPFEHQAAWWAATDGDLLTDIPPRSADRTIQVRLPDTTLVTRTLTPRPQGRAKVVAELGAYKSGKSAGAGIWAAAFAAVPNALVYLVGNEYDMCAPEFDYLLEALCGERGLNQGYRSLQNRPKDGRLWLELENGARFEARSWERSESLKGKEVDAYIYCEAYQLPGIECFTSVSQNLRVRQGYAIFPTTPDRPWVQVFHDHGHDHAGFPQWACHCGIHAQTNPYSFDQAAMDRDEQLLTREKFSIAYLGTLGDYVGRVYNYQRGTRALSLTSHPTLWHNHARGAVQENLKLPHDWAVTLGADTGTYCAAVVVAVSPEGTAYVLDERTNYRYVANTPELDDASSIVRWTDEVCRMAALWQTRPLAWVDSNSQFKQECRHHGLQLLANQRGREVRTEATRQYFQHDQIFLAPWLSLVPYELEAAQWPDQATAAGKYERVKVNDHALDCVEHVLSRHPRGQAPRTPRPLIPEAGTIQWYGSPLRKKVRRPPVDTHLGGH
Ga0211603_100039916F054926GGAMVLSGAPVAEVVPYFCPDEASEEVLLAAEATWPMQPEVLTAIEHQSGGVPWHHLGDDQRLDVSLRKHYNEMAYFLWTTNYASCDGAAKLKADTCRSAIEAKVAGMAGKESPLAAFYHDLLQRYESTSSTVS
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