Scaffold Ga0211603_10128204

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211603_10128204

Scaffold Ga0211603_10128204

Overview

Basic Information
Taxon OID	3300020427 Open in IMG/M
Scaffold ID	Ga0211603_10128204 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	938
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_065
Coordinates	Lat. (^o)	-35.2792	Long. (^o)	26.382	Alt. (m)		Depth (m)	850
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047725	Metagenome	149	Y
F056676	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211603_101282041	F047725	AGGAG	MKYIVGLMLLLFASVSWGACTGCGEEGHQQCVESADHSHETDQEHRHIDGLWLDHKHEVTPLQSLIPTEVVFAVCVFADGTLIDHKGADSMSDCLKTKREVTKKWKNRAEETDTVVINDIEYKIDGESLAFMCDLVDAQVHHYADGTWE
Ga0211603_101282042	F056676	GGAGG	MTATIATLLVLVLYINDVPKEWMGHHENTAGKWVEMGMGGCLKMKRTLKRNGWKDSYTGKTRFVCEKHEVELGLNHEGLIVVKKILTFEKKKKEKVKL

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