NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211521_10071937

Scaffold Ga0211521_10071937


Overview

Basic Information
Taxon OID3300020428 Open in IMG/M
Scaffold IDGa0211521_10071937 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1721
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021526Metagenome218Y
F026851Metagenome196Y
F081221Metagenome114N
F105104Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211521_100719372F081221AGAAGGMDEILHGLYNILILITGFSAVICASLTAVALINLVSSSMLTYRDDRLLLAWALPSGLFFSGLLMVMLGWT
Ga0211521_100719373F105104AGGAGMLHHIYYINPAGADNYMIVPFDEIKGTVAFLESLDYEVVAYWPIQEEA
Ga0211521_100719374F026851AGGAMTKQQLQQLLKDPVNMTPLEHAEVGRMKQAYFSAVAQETEAYISAKEAYDDAKEFMDLQDPGEREVLMQLLKNMRDCERNMTIIATELEVHFGISA
Ga0211521_100719375F021526AGGAGMIYFSIDYRSPPSGMGQIIDTTKPEKIGDRYNYILITYSGCGSENDPSYNLTKHFTSQEAEQEGWAGPIMTDIFQFLRDQKVTHVLDGELVYEYEGGHEKDFEGLFTLDRWIEIMTSFL
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