NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211521_10094020

Scaffold Ga0211521_10094020


Overview

Basic Information
Taxon OID3300020428 Open in IMG/M
Scaffold IDGa0211521_10094020 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1457
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005373Metagenome403N
F005611Metagenome395Y
F014263Metagenome264Y
F059444Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0211521_100940202F059444AGGGGGVTKEEEIKQKIYEIESQYPNLHIDLNRNQFKSGDVDKLYLLYNQLEEVQKYGDVNQGLGTWNGYEYVKNK
Ga0211521_100940203F005373GAGGMNEGLENIKQIEDLENKVKTLSDHLAGMCCQADEDTPSEYRTEHFRSTMDDAYEYLEKINYFKRGKXKNIKXEQKKLYTLFMKQK
Ga0211521_100940204F005611GAGGMKKYKVRAEETIYAIYETEIEAKNEKQARKIALDTCASDYLSSDWSNSAGDFTIEDIEEI
Ga0211521_100940205F014263AGGAGMSDDRYITRDMLTEESYEGNNFAEGNAVKYDLQNGEINIICFCSDESVAKGIAEGLNLLDNLEADGIDLKPTSEQKG
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