NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211521_10143697

Scaffold Ga0211521_10143697


Overview

Basic Information
Taxon OID3300020428 Open in IMG/M
Scaffold IDGa0211521_10143697 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1120
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020898Metagenome / Metatranscriptome221Y
F054088Metagenome140Y
F077379Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0211521_101436972F020898AGGAGGMQKVKLNKRIENLTENVLRNANFVMQEATKNSCKSIYKNFNFNSKTKCADGDEMHFTATMHNKFYNGRLCMLTFKNDSFVSMYTLN
Ga0211521_101436973F077379GGAGGMLTQKALTKKLVATYCSTSNTCFIHKNNKAHLAYTVNSSKVIRNLSKQQLNAFNMLQSTCMQKTKNFVTNNALIKMLYNN
Ga0211521_101436974F054088AGGMQQLKTITVKTTNKVESVHMETLYKVIENCFESLQIMESDCTSASYFVNSANIFAQLQ
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