NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211521_10163771

Scaffold Ga0211521_10163771


Overview

Basic Information
Taxon OID3300020428 Open in IMG/M
Scaffold IDGa0211521_10163771 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1033
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F013187Metagenome273Y
F029779Metagenome187Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211521_101637711F008925AGGAGMTTKSKPTIDAVTLNLVNKLKQIDDTMNEGAWEYIHLGDILRLQDAFHKAIRHYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDE
Ga0211521_101637712F029779AGGAGMMSDKEKYEELCEALVGIDATERYTHEDILSYVYNLKDTEEKFYDNKK
Ga0211521_101637713F012581GGAGMAKYTLYAKKVYYYRKDINAQDRKSAEKRGADYEADDNPERLFEPSGTEFYITSIEESDDEX
Ga0211521_101637714F013187GAGGMPTKKIKKKPRKNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETREMQDG
Ga0211521_101637715F105326N/ARSNGTNQGRESYMEQRRNLTPKEHWELHQSLWNMLGCDMQLKHKNKNTVVYVDRKSKRQYTYSALGFIEEKRYANKKD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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