NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211581_10045540

Scaffold Ga0211581_10045540


Overview

Basic Information
Taxon OID3300020429 Open in IMG/M
Scaffold IDGa0211581_10045540 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000614 (ERX556134-ERR599032)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1798
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_128
CoordinatesLat. (o)0.0328Long. (o)-153.705Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F027536Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0211581_100455401F005813GAGGMRLYKNSNGVWAGTQADARKYCGKAYSTVDVPTDKPGLLGFLNLNQVGSLASSPTLEEVRTGEPTTSAMSWFRWSYDCMCRGQYEDAKEHLAKALEMSRKEKTDEE
Ga0211581_100455403F006217AGGAMIELLLSVIEEPNQIHKYCMSKHDHWTGRAACVQELRHAQRKLEVERLRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKVKRSKC
Ga0211581_100455405F027536AGGAGGMKVSPDGWRYKVTPIDRVINDCRRRADDAWWDGNDEEARLHEQEQKLYEKDKEEGVLWVPNF
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Institute for Fundamental Biomedical Research
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