NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211622_10009968

Scaffold Ga0211622_10009968


Overview

Basic Information
Taxon OID3300020430 Open in IMG/M
Scaffold IDGa0211622_10009968 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5240
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → Porticoccus → unclassified Porticoccus → Porticoccus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.8951Long. (o)-140.3174Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052433Metagenome142Y
F059124Metagenome134Y
F072426Metagenome121Y
F073751Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211622_100099682F072426N/AMNTKPKLVDPNWFAKPKPKPIKKIMPTNADNSLIINIIGLCILVIGGLCIYQRYLDKEKKELESQNKIIELNEYVKRNIK
Ga0211622_100099683F059124N/AMNFDSNLILAIIIYLGSCYALYNYKHSKMFDESGNFKSFGLSKDETVFPYWLVTTLIGLSSYYFLIIRRDNLL
Ga0211622_100099685F073751N/AMVQNNIKWNLTSEKCFEIIHLTLIDILTESKDGIRNINDLIRMLNSRTKVYKLHNYRKYNSFSKYLKLEYDGFLNFIEDYNFYGVIKNDKDISIKLYKNLVNLDDLKYTGKRLTKDSEWIFIDDLGDELL
Ga0211622_100099687F052433N/AMDSSKYYPYNIPFYTDLNFIDVKFINNEDHIINIYFVKGDIQGDLAALIFPHSERKYQFPEKSIVAIVSDKKPDKYHCFIKLKNGMTYIYP
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