NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211622_10040212

Scaffold Ga0211622_10040212


Overview

Basic Information
Taxon OID3300020430 Open in IMG/M
Scaffold IDGa0211622_10040212 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2113
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.8951Long. (o)-140.3174Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001504Metagenome / Metatranscriptome681Y
F025518Metagenome / Metatranscriptome201Y
F049702Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0211622_100402123F001504N/AMTFDSEYYYAVQTFLEDDELCKIWNIIEIAMNRAGYDVSNAELSMRLYDNELEDNIEYDMEISL
Ga0211622_100402125F049702N/AMTLIDFNKDELHTIYSSLSYTRLEIGFANEREEELYNKLTKIMDKVAKVRKMCTCKEDVSNDT
Ga0211622_100402128F025518N/AMFTETMESKVTKMTNKKLVHNTKTSLREEAKVFLPVVKEFYPHLDDMLTDRIAKYCAVYSKGTDKASIRQAINDFEEVFDQELTQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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