Scaffold Ga0211554_10000318

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211554_10000318

Scaffold Ga0211554_10000318

Overview

Basic Information
Taxon OID	3300020431 Open in IMG/M
Scaffold ID	Ga0211554_10000318 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	36886
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (50.91%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_145
Coordinates	Lat. (^o)	39.2173	Long. (^o)	-72.0327	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064623	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211554_1000031819	F064623	GGAGG	MSEVTILNSIGGCASSQLFKIVNELGIESNSDHFHQGINFGRCKHTLYPPQYIEIDRAIFVMGDPIQSVISLFRRDMGVTHIENKGLPLHPTRTDNVELHPESKEIYKVHPQYKKNYDLKEYVEGGLDWFMTYEHIYNWTTIETKYPILCVKSDVQWEYGKEIFVDFLRQKTVPSNYVKKPRNSKIDLVPPDKRDQFESILQKATEYYNTLPDYFVRK

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