NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211556_10075607

Scaffold Ga0211556_10075607


Overview

Basic Information
Taxon OID3300020432 Open in IMG/M
Scaffold IDGa0211556_10075607 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002052 (ERX556103-ERR599100)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1627
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_142
CoordinatesLat. (o)25.7109Long. (o)-88.4916Alt. (m)Depth (m)125
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058738Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0211556_100756073F058738N/AMKNKLNLIEDLILSELRVFNMMQFFRGFITDTESRLIVYEVYCRDRDNAEPINVKWVEQQLEVSFPTAFKIIEKLINEGFLKKSRGAKDKRSYTLHPTNALKEGIKTYTMMWLEKAIELELISMSDKEKNELYKGLKIQPSVRKFDELSQELHAKLHNDLINLND
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