NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211556_10100693

Scaffold Ga0211556_10100693


Overview

Basic Information
Taxon OID3300020432 Open in IMG/M
Scaffold IDGa0211556_10100693 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002052 (ERX556103-ERR599100)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1373
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_142
CoordinatesLat. (o)25.7109Long. (o)-88.4916Alt. (m)Depth (m)125
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101300Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211556_101006931F101300N/AAEGFADTRWTEQRVKIRSMPTPVTLLAGERLVDRVVERDSGVNSTYSQSGNIVTVTCSSPHGLSTGNQVFLKVTSGNTKTGLYKIIVTSTTEFTAESIISATASGNLKVQRRIKGFDFNNYVGNTVTGVDLATDEILFKRDESYGVQLINNKPKTVTPAHRGFLAGQDRFLTTEIRYQCNCPDFMRRRKYNLYKDTTDERFPNTGIESVIPGTRQDREGNVIDSRDNPGVFNDFGYAPTGNFYQVPEYNDDPEGSLSGLLYYQTRWCKHIYAALWSMKHDEGNDQFSFEGRYQQDGPNVSITIVNHGLLPDKRVAIDFTSGDLLDGQYVISSVPDENTIVIVYPFSGTTQGDCTVSNLKIHEYVNTWLLEPNDQPAGNALDKFYKNFEKEQERTRKAAERMALLGYGLPWTGNKDIEFGQRNAPEEVAQFDPTLVTMKLTDTIRRDGRELSRDGKLL
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