NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211556_10111722

Scaffold Ga0211556_10111722


Overview

Basic Information
Taxon OID3300020432 Open in IMG/M
Scaffold IDGa0211556_10111722 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002052 (ERX556103-ERR599100)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1291
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_142
CoordinatesLat. (o)25.7109Long. (o)-88.4916Alt. (m)Depth (m)125
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010274Metagenome / Metatranscriptome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0211556_101117224F010274GAGGMKRTEILNALEKMVEDLYEVGNDDAQYYEQIVGETMDIVMEYDL
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Institute for Fundamental Biomedical Research
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