NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211565_10000239

Scaffold Ga0211565_10000239


Overview

Basic Information
Taxon OID3300020433 Open in IMG/M
Scaffold IDGa0211565_10000239 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31921
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (23.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3315Long. (o)-102.9484Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029108Metagenome / Metatranscriptome189Y
F031064Metagenome / Metatranscriptome183Y
F040577Metagenome / Metatranscriptome161Y
F082523Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0211565_1000023922F082523N/AMSGEGHSAFFKRTNKTQKDNWELCKIFERWIIFSPVKKHMKFYPDHIGQVELYEKGGDNVPKWMEKDLRFNGTFELMISAYESWYEDADIYESFDRADSFVSLAKKFAEQYNLNYYPRGVYDLEEELQKKDLTLSQK
Ga0211565_1000023948F040577N/AMDELQKISAEILDIFNNKIESLSKEQAEVLNLHNNSMNFCVELGDPQKAMWEAKQTLKYLIEITNDG
Ga0211565_1000023951F029108N/AMKQINPNKYLVGKKKLGKGKVGAKGGIGVPTGAFGGKSKFLKKKS
Ga0211565_1000023973F031064N/AMIKNKTHFKKGDVLLSRDNKVFQFIQAVEHEELGMIAMVRPYRTNRKVGIRFQDVKLHPLFA
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