NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211565_10032149

Scaffold Ga0211565_10032149


Overview

Basic Information
Taxon OID3300020433 Open in IMG/M
Scaffold IDGa0211565_10032149 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2224
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3315Long. (o)-102.9484Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F036730Metagenome / Metatranscriptome169Y
F039389Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0211565_100321493F002374N/AMDQVLLYVGIILASVSFFLCLYACARVGKFLNSVKGLDWDTIACLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNNVTDIRKNNIGG
Ga0211565_100321494F039389AGGAGGLAFLGDLGKVFGLGSSKQVLGGFGESVGNIFGIGGTGRRLGETIAGATSSLASGTADQPLEQSAVPTPGQNGGAQETSRTGSTTTNIIDVSGRTPTQEMGLGVLTPFLPQIAKIFGNRAVQTGLGAGAGIIAGQMGMNGREKPVLTQSRRNKARVRQLVNFLGIEGTAEFLTQQGGIQVTANDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRPAMRRATSTTLIKN
Ga0211565_100321495F001611AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALTTGQPFGVLNGAYLNNDLITTGSQRNRVLVRFTNDTAASRTIRCGIFIG
Ga0211565_100321496F036730GGGGGMAQEFFINSEELESKIRQLLPSQGGRGAGFDLSASTQIVPIVDLTESAEGSNLRQDLQSSFGLDNINSFL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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