NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211565_10037159

Scaffold Ga0211565_10037159


Overview

Basic Information
Taxon OID3300020433 Open in IMG/M
Scaffold IDGa0211565_10037159 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2069
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3315Long. (o)-102.9484Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F001479Metagenome / Metatranscriptome687Y
F013897Metagenome / Metatranscriptome267Y
F025518Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0211565_100371592F025518GAGGMSDKLVHNTKTSLKEESKLYLPTVKEFYPHLDDMLTDRIAKYCAVYSKGTDKASIRQAINDFEEAFDEELTS
Ga0211565_100371594F013897N/AMNLTKDQLLELMNTIDYATDNRYDYEKYTIIRSGTFDLEPIRDILYNEYVKEDN
Ga0211565_100371595F001026AGGAGMKHTLELDDLELTALMTHLQGQSEVMNESRLNSSTPHSPDREEILLNMIYANVFTLAYEADKNPKVDYNIIENQDRIYKYS
Ga0211565_100371598F001479AGGAGMTKEMLFLCDVYDRFLDENDLPHRSADDILYGQNAMALTSNQKYWLESFIATWEVIAEHC
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Institute for Fundamental Biomedical Research
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