Scaffold Ga0211565_10055457

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211565_10055457

Scaffold Ga0211565_10055457

Overview

Basic Information
Taxon OID	3300020433 Open in IMG/M
Scaffold ID	Ga0211565_10055457 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1691
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_138
Coordinates	Lat. (^o)	6.3315	Long. (^o)	-102.9484	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001541	Metagenome / Metatranscriptome	674	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_100554573	F001541	AGG	MFDSVQVRFKDAPHYESPFANTRVVPFVGSYFNLLKELVNEIKTEYFWFFANFTNIVPADFLDYIPEQHEKDQIHVWYTTHPKGGLNKEGNVMLIPTKKFKEQMHDLKFLRDFKEINYHAHPTLFQQPIGTTYFELKDPLTAYKSNPVFYKWMIN

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