NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211565_10069303

Scaffold Ga0211565_10069303


Overview

Basic Information
Taxon OID3300020433 Open in IMG/M
Scaffold IDGa0211565_10069303 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1509
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3315Long. (o)-102.9484Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082796Metagenome113Y
F084360Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211565_100693031F084360GAGGMSKFHIIGTGACGFLRMNYILRDYIPLRYKGGRGKYQNSFETWSDNELIWNSESLTKEERLRRVSLQGTTTNITHSYIKYIPEFVELYPNIKFLCLKGEKEHSIKSLTVSWGYNNPCYVKDRSLGIGHNRYAVDQFPDHSDSLNEFDATTKYWEEYYDIAEQYPDNVILVDAPRFFSDIQYSTDVLSEVNLDVGNKTNLPVDFNSWNISTTLHGGLGNNLFQMGETISFCKKYNLPEPSFGTWDLWNGGDKFPAPYNSDHFIGGHDGTQQDIKDTFPNLDWKENLVANFDTKFIINDMFRFGRVDELDFVRDKLQVTKSLNKKTASLHLRYCTRSADDHVNGYVDDSFYIECFKYIPDDVEVYIFSDDESKSEIKLQWFRKNFPQNFSCVKVNAFQSLKKMVECEYHILH
Ga0211565_100693032F082796N/AYWRHNKPKGKPTYQLGDHVHFSKAYGVGLEYFVTEYAFQLHSHIYPEGQDTRPFPPHEPMEHGMFVGQIIEEDGKPRMNMDVRWEYELRDIPYE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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