NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211565_10109187

Scaffold Ga0211565_10109187


Overview

Basic Information
Taxon OID3300020433 Open in IMG/M
Scaffold IDGa0211565_10109187 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1194
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3315Long. (o)-102.9484Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003751Metagenome / Metatranscriptome470Y

Sequences

Protein IDFamilyRBSSequence
Ga0211565_101091872F003751AGGGGGMATYKSSAGAILQPGNQINKLSGYNDEGVFGWPGVEAFELIGFSKITNKSGTKASFKSLDITVPSPDRRPDDRVRDDRTTLVVQASSDRPAYIYGASVAVAQDIPAGGLATFPASPVTTDLQGTNGEIILLGPLNGSNPFGVPTTQLTGLSAASASLSIGASGIAEGTADTTNGNLPFWTSVTATIARADAADSMMFKVTSDTTFKIFNMDAITDTTANGDGVFISDTASDEGKAAYIVSRVNYLRPAKAVGWNDIQGFIDFASQIGGGDA
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Institute for Fundamental Biomedical Research
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