NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211565_10252624

Scaffold Ga0211565_10252624


Overview

Basic Information
Taxon OID3300020433 Open in IMG/M
Scaffold IDGa0211565_10252624 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3315Long. (o)-102.9484Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039179Metagenome164N
F054942Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0211565_102526242F054942GAGMLKKLWKSYSNFCGKLVNVDQEKEWADLKERWKGMRKSPKEFVRLYIEQVKENFKWAKGYKDFPIYKIGSGVMITTIFITSVSEKISNHLSIQRLKYNLENCDCTDERKLLMIEEYENKRKLEQYGAL
Ga0211565_102526243F039179GGAMKSLLIKIGVGVSLGVNLFVFTVAMYGLYTREARVEENRKWLTEQINQQVHQSVILMMPPVTG

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