NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211708_10000098

Scaffold Ga0211708_10000098


Overview

Basic Information
Taxon OID3300020436 Open in IMG/M
Scaffold IDGa0211708_10000098 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35998
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (33.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066764Metagenome126Y
F071186Metagenome122Y
F091879Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211708_1000009823F091879GAGMSYPELMALRYFNVQSGNGFSVDKNLKGYNPTREAYAVGGATDSVEMVDNDLLSYNNFEKIMKLNIEFMERQPDTTMQVIGAWINDDNYVYIEVADIVFDREEAIALGRERGEEAIWDFDNDCEIKLT
Ga0211708_1000009833F071186N/AMSNVNTSKTYWDNEGKYQEQYNAAWKALIPVSGEAKDGWPEALRAISRIGYDYYNNGFCNLWRADEEYDSDGSYYDVYRMDSYYRDMVEYLAYEIPRDLHKELQEFLLDAQGYGNWSNQASIIDRIIDHIMEGIIKDGLLEEELVS
Ga0211708_1000009842F066764GGAMNTDIPRILENIRISYEYEMGEYLEPDSRRRHKVELRNALVNAAKPYGTCAQLATMVGKANHTTTIHCMKEHEVYHNFSPQYRRNYAKALEVVEKFARRHQLLPRLNGQRGGASSLESEIRTINMSIAALQSRRDRMIESLESSRQIAKFDNSSTI
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