NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211708_10003764

Scaffold Ga0211708_10003764


Overview

Basic Information
Taxon OID3300020436 Open in IMG/M
Scaffold IDGa0211708_10003764 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5683
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006773Metagenome / Metatranscriptome365Y
F031893Metagenome181Y
F079327Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0211708_1000376413F006773GGTGGMTNNIVTKSNLPWKNGRQEVDYFVEVGTTPYGKYGLYKEMVPVGTGSRGAHRAVAEEIKMSNPEIFENLELRQVISRG
Ga0211708_100037643F079327GAGGMNEKYYIYKLARQVEKTSYHHYDVRMGDGINSGAVYYGLTQDPQSRLSKHRPKKGHDISLIVVAEFDNPWEALEHEATLVAEHFRTYGKEPECQGMANTGHRGA
Ga0211708_100037646F031893AGGAGGMKLQIELDKYDIGQMQKNRYGHNDVLTKDYMLDILHDIVDQIHDQL
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