NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211539_10004853

Scaffold Ga0211539_10004853


Overview

Basic Information
Taxon OID3300020437 Open in IMG/M
Scaffold IDGa0211539_10004853 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5522
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5Long. (o)70.0Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024809Metagenome204Y
F057382Metagenome136N
F073646Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211539_100048531F073646AGGAGGMLQSEYLEIAIELYDIYSENNIHHKKWLTARELAKLKGGPGLIAKVKKRQGLLSELKPIFADYVNTQRQYRSCNTPQQWTCKFDDWLFNEYEFTNQELDELRSDKNRQGGCKTSQKVTNG
Ga0211539_1000485311F024809AGGMNYSQKVLFDDWIKRCPIDGVFVDEPVSEVQMDDGRVGYLVKVFLTIDKEDWEQNQSPPGISENSENLPSQNRFEGA
Ga0211539_100048535F057382AGGAGGMSKNDLTKAELKQLISTITFFQLGARTKELKTIKFKLKNQLKEMESK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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