NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211539_10085478

Scaffold Ga0211539_10085478


Overview

Basic Information
Taxon OID3300020437 Open in IMG/M
Scaffold IDGa0211539_10085478 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1258
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5Long. (o)70.0Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002093Metagenome / Metatranscriptome594Y
F064884Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0211539_100854781F064884N/ALKGETMNAIENTVRHYGNIVGAGPLFDTNASKTYIVEGTDMFVGGPASSGGSFTFTESGADGSSVGTLLAALKALGTVDSIDLNDSGTTAKIENLEL
Ga0211539_100854782F002093AGGAGGMAYDSSLPAGGPGNFVSPNTAHEADGVEVDFITVDYISDVSGEVTEPRASANTAALQLAMEAIQNQGVNILGKGVLSNSDTEQTYMVRRDSLDTISGTTTVAAIQAAIRALNALTPDKVTATISSATAADRDMGDTSVGA
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